|
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Structure of Book, Podcast |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast |
| 1 | Introduction to Evolutionary Biology | --- |
| 2 | Introduction to Ecology | --- |
| 3 | Evolutionary Ecology (and Microbiology) | --- |
| 4 | Differentiating Evolutionary and Ecological Studies | Stasis, Time, Variations |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast |
| 1 | General Principles | --- |
| 2 | Types of Microorganisms | Bacteria, Archaea, Eukarya, Prokaryote, Viruses, Other |
| 3 | Some Additional Microbe-Associated Topics | Chemical Evolution, Semi-Autonomous Entities, Microbial Evolution |
| 4 | Terms and Concepts | Media, Culturing, Growth Curve, Koch's Postulates |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast |
| 1 | Mutations | Central Dogma, Damage |
| 2 | Types of Mutations | Transitions/Transversions, Point, Frameshift, Impact, Etc. |
| 3 | Complications on Mutations | Convergent/Parallel, Conditional/Plasticity, Neutral, Epistasis/Compensatory, Pleiotropy |
| 4 | Mutation Rates | Elevation, Rates, General Mutator, Likelihood |
| 5 | Fixation of Mutations | --- |
| 6 | Sampling Error (Genetic Drift) in Microorganisms | Muller's Ratchet |
| 7 | Migration and Microbial Evolution | Sympatry, Introgression, Biogeography |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast |
| 1 | Natural Selection Basics | Fitness, Stochasticity, Hard/Soft, Purifying/Directional |
| 2 | Periodic Selection and Consequences | Hitchhiking, General Mutators |
| 3 | Additional Concepts of Natural Selection | Frequency-Dependence, Inclusive Fitness |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast |
| 1 | Overview of Non-Darwinian Evolution from a Microbial Perspective | Mutations, Substitutions, Specialization, Epistasis, Drift, Horizontal Gene Transfer |
| 2 | Diversity of Natural Selection | Adaptation, Periodic, Neutral |
| 3 | Microbial Resistance and Evolution | --- |
| 4 | Natural Selection and Microbial Resistance | Utility, Cost of Carriage, Transient Utility |
| 5 | Non-Darwinian Forces and Microbial Resistance | Mutation, Migration, Drift |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast |
| 1 | Experimental Evolution, An Introduction | --- |
| 2 | Serial Passage | Environments, Transmission, Avoiding Evolution |
| 3 | Chemostats | Basics, Births/Deaths, Additional |
| 4 | Interactions | Competition |
| 5 | The Big(ger) Picture | Experimental Evolution, Passage Through Time |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast |
| 1 | Phenomena Impacted by Gene Exchange | --- |
| 2 | Variations on Gene Exchange | --- |
| 3 | Recombination | Genetic, Molecular |
| 4 | Outcrossing | You Are What You Eat, Bacteria |
| 5 | Additional Issues | Linkage, Phenotype, Diversity, Why Sex |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast |
| 1 | Organisms and Phylogenies | Interfacing, Horizontal Gene Transfer, Phylogenies |
| 2 | Evolutionary Divergence | Speciation, Orthologs/Paralogs, Mosaicism |
| 3 | Gene Transferability | Likelihoods, Complexity, Core Genes |
| 4 | Categorizing Genes in Terms of Their Transferability | --- |
| 5 | Gene Redundancy | Zone of Paralogy, Redundancy, Erosion |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast Podcast |
| 1 | Games of Cooperation and Defection | Prisoner's Dilemma, Tragedy of the Commons |
| 2 | Achieving Mutual Cooperation | Spatial Structure, Individuality, Mutation, Purification |
| 3 | Microbial Social Interactions | Communication, Social Traits, |
| 4 | Specific Circumstances | Cooperation, Economy/Expediency Chemostats, Batch, Biofilms, Spores, Genomic Merging |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast |
| 1 | Variations on the Theme | Microbe/Macrobe, Microbe/Microbe, Consortia |
| 2 | Endosymbiosis | Origin, Mitochondria, Diversity |
| 3 | Serial Endosymbiosis | Plastids, Secondary, Other |
| 4 | Genomic Transfer | --- |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast |
| 1 | On Hosts and Parasites | Dilemma, History |
| 2 | Transmission | Evolution, Availability |
| 3 | Parasitism versus Commensalism | Expedience, Restraint, Virulence |
| 4 | Examples | Phage, DI particles, Bleeding Out, Vectors, Contact, STDs |
| 5 | Additional Issues | Decay, Cancer |
| # | Sections (individual pages) | Sub-Sections (major bookmarks) |
| 0 | Root Page | Vocabulary, Practice Quiz, Podcast Podcast Podcast |
| 1 | What is an Individual? | --- |
| 2 | Multilevel Selection | Group Selection, Unit of Selection, Cheating |
| 3 | Size Evolution | Advantages, Growth, Intracellular Movement, Shear |
| 4 | More Complex Cells | Endosymbionts, Endomembranes |
| 5 | More Complex Bodies | Colonial, More than Colonial, Coenocytic, Cellular Differentiation, Microbiomes |
| 6 | Problems in Multicellularity | Conflict Mediation, Germ Lines, Cancer, Conclusion |
Part A of
(recitation actually starts at 5:45 into the video…)